# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG9139/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG9139.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG9139.fasta (Sat Feb 12 15:50:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.309 C 0.194 G 0.207 T 0.290


MOTIF CAAAGTCC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAAAGTCC   GGACTTTG         10          0   8.9e-004   4.9e+000
#         CAAAGTCC   GGACTTTG         10          0   8.9e-004   4.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 4.9e+000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAAAGTA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAGTA   TACTTTTT          6          0   1.5e-002   8.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGAGAGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGAGAGA   TCTCTCTT          6          0   1.5e-002   8.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGCAACAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCAACAA   TTGTTGCT          6          0   1.5e-002   8.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAACCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAACCA   TGGTTTTT         10          2   1.8e-002   9.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 9.7e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.72 seconds