# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG8478/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG8478.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG8478.fasta (Sat Feb 12 15:50:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:12 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.276 C 0.227 G 0.237 T 0.260


MOTIF GMGAGCGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GMGAGCGA   TCGCTCKC         16          0   1.2e-005   7.4e-002
#         GCGAGCGA   TCGCTCGC         11          0   4.4e-004   2.7e+000
#         GAGAGCGA   TCGCTCTC          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 7.4e-002
0.000000 0.000000 1.000000 0.000000
0.375000 0.625000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAAAGAGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAAGAGA   TCTCTTTC         11          1   2.9e-003   1.8e+001
#         GAAAGAGA   TCTCTTTC         11          1   2.9e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.8e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACAATAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAATAA   TTATTGTT          8          0   3.7e-003   2.3e+001
#         AACAATAA   TTATTGTT          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACACACAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACACAC   GTGTGTGT         10          2   1.8e-002   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.1e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATTTTCCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTTCCA   TGGAAAAT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.39 seconds