# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG8388/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG8388.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG8388.fasta (Sat Feb 12 15:50:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.293 C 0.204 G 0.208 T 0.296


MOTIF ACAGTGMC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAGTGMC   GKCACTGT         25          0   1.6e-008   9.7e-005
#         ACAGTGCC   GGCACTGT         18          0   2.8e-006   1.7e-002
#         ACAGTGAC   GTCACTGT          7          0   7.5e-003   4.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 9.7e-005
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.280000 0.720000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ASAAACTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ASAAACTG   CAGTTTST         16          0   1.2e-005   7.1e-002
#         ACAAACTG   CAGTTTGT         14          0   5.1e-005   3.0e-001
#         AGAAACTG   CAGTTTCT          7          0   7.5e-003   4.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 7.1e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.666667 0.333333 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAAGTAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGTAT   ATACTTTT         11          0   4.4e-004   2.6e+000
#         AAAAGTAT   ATACTTTT         11          0   4.4e-004   2.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.6e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF TAAAAATA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAAAATA   TATTTTTA          8          0   3.7e-003   2.2e+001
#         TAAAAATA   TATTTTTA          8          0   3.7e-003   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.2e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATATAT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATATAT   ATATATTT          7          0   7.5e-003   4.4e+001
#         AAATATAT   ATATATTT          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.4e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 2.70 seconds