# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG8359/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG8359.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG8359.fasta (Sat Feb 12 15:50:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.262 C 0.240 G 0.235 T 0.262


MOTIF GCGTTTTD DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGTTTTD   HAAAACGC         41          7   8.9e-008   5.3e-004
#         GCGTTTTG   CAAAACGC         10          0   8.9e-004   5.3e+000
#         GCGTTTTT   AAAAACGC         24          7   1.2e-003   7.3e+000
#         GCGTTTTA   TAAAACGC          9          0   1.8e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 5.3e-004
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.204545 0.000000 0.250000 0.545455


MOTIF AARTCGCG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AARTCGCG   CGCGAYTT         21          3   1.0e-004   5.8e-001
#         AAATCGCG   CGCGATTT         14          3   5.7e-003   3.3e+001
#         AAGTCGCG   CGCGACTT          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 5.8e-001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.636364 0.000000 0.363636 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CAAATCGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAAATCGC   GCGATTTG          7          0   7.5e-003   4.3e+001
#         CAAATCGC   GCGATTTG          7          0   7.5e-003   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.3e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAACCGCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACCGCC   GGCGGTTT          6          0   1.5e-002   8.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.6e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AATCGCGT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATCGCGT   ACGCGATT          6          0   1.5e-002   8.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.5e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 1.63 seconds