# DREME 5.3.3 # command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG8281/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG8281.fasta # positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG8281.fasta (Sat Feb 12 15:50:47 EST 2022) # negatives: 250 from shuffled positives # host: c23n02.farnam.hpc.yale.internal # when: Sat Feb 12 15:55:58 EST 2022 MEME version 5.3.3 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.268 C 0.235 G 0.234 T 0.262 MOTIF ADTGAMTG DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ADTGAMTG CAKTCAHT 81 12 1.5e-016 5.7e-013 # AATGAATG CATTCATT 25 2 1.6e-006 6.4e-003 # AATGACTG CAGTCATT 26 4 1.8e-005 7.0e-002 # AGTGACTG CAGTCACT 19 2 8.3e-005 3.2e-001 # AGTGAATG CATTCACT 13 1 8.0e-004 3.1e+000 # ATTGAATG CATTCAAT 14 2 1.8e-003 7.1e+000 # ATTGACTG CAGTCAAT 14 2 1.8e-003 7.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 111 E= 5.7e-013 1.000000 0.000000 0.000000 0.000000 0.477477 0.000000 0.270270 0.252252 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.450450 0.549550 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CHAACTGA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CHAACTGA TCAGTTDG 38 1 1.7e-011 6.2e-008 # CTAACTGA TCAGTTAG 22 1 1.8e-006 6.6e-003 # CAAACTGA TCAGTTTG 15 0 2.5e-005 8.8e-002 # CCAACTGA TCAGTTGG 8 0 3.7e-003 1.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 6.2e-008 0.000000 1.000000 0.000000 0.000000 0.320000 0.160000 0.000000 0.520000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AYCCATCC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AYCCATCC GGATGGRT 41 8 3.0e-007 1.0e-003 # ATCCATCC GGATGGAT 40 8 5.4e-007 1.9e-003 # ACCCATCC GGATGGGT 10 0 8.9e-004 3.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 74 E= 1.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.121622 0.000000 0.878378 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACSGACTG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ACSGACTG CAGTCSGT 19 0 1.3e-006 4.5e-003 # ACGGACTG CAGTCCGT 12 0 2.1e-004 7.2e-001 # ACCGACTG CAGTCGGT 7 0 7.5e-003 2.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 4.5e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.368421 0.631579 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CAGCCAGY DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CAGCCAGY RCTGGCTG 13 0 1.0e-004 3.5e-001 # CAGCCAGC GCTGGCTG 7 0 7.5e-003 2.5e+001 # CAGCCAGT ACTGGCTG 7 0 7.5e-003 2.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 3.5e-001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 # Stopping reason: target motif count reached # Running time: 1.50 seconds