# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG7839/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG7839.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG7839.fasta (Sat Feb 12 15:50:46 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n08.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.381 C 0.125 G 0.127 T 0.367


MOTIF TAAATATA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAATATA   TATATTTA         14          4   1.4e-002   7.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 7.2e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTCATTA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTCATTA   TAATGAAT          6          0   1.5e-002   7.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAATAATA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAATAATA   TATTATTC          6          0   1.5e-002   7.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.8e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATCAATT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATCAATT   AATTGATT          5          0   3.1e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATAATTAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAATTAC   GTAATTAT          5          0   3.1e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.62 seconds