# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG7745/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG7745.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG7745.fasta (Sat Feb 12 15:50:46 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:56 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.296 C 0.204 G 0.196 T 0.305


MOTIF DTTAATTA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    DTTAATTA   TAATTAAH         31          1   3.0e-009   1.9e-005
#         ATTAATTA   TAATTAAT         17          1   5.6e-005   3.6e-001
#         TTTAATTA   TAATTAAA         12          0   2.1e-004   1.3e+000
#         GTTAATTA   TAATTAAC          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.9e-005
0.483871 0.000000 0.258065 0.258065
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF KAAAATTA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    KAAAATTA   TAATTTTM         19          1   1.5e-005   8.9e-002
#         GAAAATTA   TAATTTTC         11          1   2.9e-003   1.8e+001
#         TAAAATTA   TAATTTTA          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 8.9e-002
0.000000 0.000000 0.578947 0.421053
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGCAAACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCAAACA   TGTTTGCT          6          0   1.5e-002   9.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TATGCAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATGCAAA   TTTGCATA          6          0   1.5e-002   9.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.1e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CATAATTA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATAATTA   TAATTATG          8          1   1.9e-002   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.1e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.47 seconds