# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG7271/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG7271.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG7271.fasta (Sat Feb 12 15:50:46 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n12.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.301 C 0.218 G 0.214 T 0.268


MOTIF AMCGGAAR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AMCGGAAR   YTTCCGKT         43          1   3.9e-013   2.4e-009
#         ACCGGAAA   TTTCCGGT         16          0   1.2e-005   7.4e-002
#         AACGGAAA   TTTCCGTT         16          1   1.1e-004   6.9e-001
#         AACGGAAG   CTTCCGTT         11          0   4.4e-004   2.7e+000
#         ACCGGAAG   CTTCCGGT          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 2.4e-009
1.000000 0.000000 0.000000 0.000000
0.553191 0.446809 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.617021 0.000000 0.382979 0.000000


MOTIF GCCATAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCATAAA   TTTATGGC         10          0   8.9e-004   5.4e+000
#         GCCATAAA   TTTATGGC         10          0   8.9e-004   5.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 5.4e+000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATCATAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCATAAA   TTTATGAT          6          0   1.5e-002   9.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCGTTTCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGTTTCC   GGAAACGG          6          0   1.5e-002   9.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.1e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AATAAAAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATAAAAC   GTTTTATT          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.84 seconds