# DREME 5.3.3 # command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG6808/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG6808.fasta # positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG6808.fasta (Sat Feb 12 15:50:46 EST 2022) # negatives: 250 from shuffled positives # host: c22n12.farnam.hpc.yale.internal # when: Sat Feb 12 15:55:56 EST 2022 MEME version 5.3.3 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.294 C 0.203 G 0.200 T 0.303 MOTIF AGTGMTGC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AGTGMTGC GCAKCACT 24 0 3.3e-008 2.0e-004 # AGTGCTGC GCAGCACT 17 0 5.8e-006 3.4e-002 # AGTGATGC GCATCACT 7 0 7.5e-003 4.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.0e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.291667 0.708333 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAAACGAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AAAACGAA TTCGTTTT 7 0 7.5e-003 4.4e+001 # AAAACGAA TTCGTTTT 7 0 7.5e-003 4.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.4e+001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAAAAGCA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CAAAAGCA TGCTTTTG 6 0 1.5e-002 8.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.8e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAACAAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AAAACAAA TTTGTTTT 15 5 1.9e-002 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.1e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAACACA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AAAACACA TGTGTTTT 5 0 3.1e-002 1.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: target motif count reached # Running time: 1.24 seconds