# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG4424/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG4424.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG4424.fasta (Sat Feb 12 15:50:46 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.332 C 0.160 G 0.170 T 0.338


MOTIF AGTGTTGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGTTGC   GCAACACT          8          0   3.7e-003   2.2e+001
#         AGTGTTGC   GCAACACT          8          0   3.7e-003   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GTAGTAGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTAGTAGA   TCTACTAC          8          0   3.7e-003   2.2e+001
#         GTAGTAGA   TCTACTAC          8          0   3.7e-003   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.2e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATGAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATGAAA   TTTCATTT          6          0   1.5e-002   8.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.9e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTAAAAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTAAAAC   GTTTTAAT          6          0   1.5e-002   8.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATATATTA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATATTA   TAATATAT          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.23 seconds