# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG3995/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG3995.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG3995.fasta (Sat Feb 12 15:50:46 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:12 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.287 C 0.214 G 0.208 T 0.291


MOTIF AGTCACHG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTCACHG   CDGTGACT         44          2   2.3e-012   1.4e-008
#         AGTCACAG   CTGTGACT         27          2   4.3e-007   2.6e-003
#         AGTCACTG   CAGTGACT         14          0   5.1e-005   3.1e-001
#         AGTCACCG   CGGTGACT          7          0   7.5e-003   4.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 1.4e-008
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.644068 0.118644 0.000000 0.237288
0.000000 0.000000 1.000000 0.000000


MOTIF AAATCACG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATCACG   CGTGATTT          9          0   1.8e-003   1.1e+001
#         AAATCACG   CGTGATTT          9          0   1.8e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.1e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF TATCGATA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATCGATA   TATCGATA          9          0   1.8e-003   1.1e+001
#         TATCGATA   TATCGATA          9          0   1.8e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.1e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGTCACGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTCACGG   CCGTGACT         11          2   1.0e-002   6.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 6.0e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACTGTTAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTGTTAC   GTAACAGT          6          0   1.5e-002   8.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.6e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.23 seconds