# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG3407/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG3407.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG3407.fasta (Sat Feb 12 15:50:45 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:56:00 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.304 C 0.201 G 0.204 T 0.291


MOTIF TTTGTTTR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTTGTTTR   YAAACAAA         20          1   7.3e-006   4.4e-002
#         TTTGTTTG   CAAACAAA         13          1   8.0e-004   4.8e+000
#         TTTGTTTA   TAAACAAA          7          0   7.5e-003   4.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 4.4e-002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.333333 0.000000 0.666667 0.000000


MOTIF CGTTGCCR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGTTGCCR   YGGCAACG         18          1   2.9e-005   1.7e-001
#         CGTTGCCA   TGGCAACG         11          1   2.9e-003   1.7e+001
#         CGTTGCCG   CGGCAACG          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.7e-001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.611111 0.000000 0.388889 0.000000


MOTIF AATATTTR DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATATTTR   YAAATATT         18          2   1.6e-004   9.1e-001
#         AATATTTG   CAAATATT         10          0   8.9e-004   5.2e+000
#         AATATTTA   TAAATATT         12          2   5.9e-003   3.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 9.1e-001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.500000 0.000000 0.500000 0.000000


MOTIF AAAGTAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGTAAA   TTTACTTT          7          0   7.5e-003   4.3e+001
#         AAAGTAAA   TTTACTTT          7          0   7.5e-003   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGCAAACA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCAAACA   TGTTTGCT          7          0   7.5e-003   4.3e+001
#         AGCAAACA   TGTTTGCT          7          0   7.5e-003   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.22 seconds