# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG33557/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG33557.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG33557.fasta (Sat Feb 12 15:50:45 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.313 C 0.188 G 0.190 T 0.310


MOTIF TATGTACA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATGTACA   TGTACATA         12          1   1.5e-003   9.6e+000
#         TATGTACA   TGTACATA         12          1   1.5e-003   9.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 9.6e+000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATATTTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATATTTG   CAAATATT          8          0   3.7e-003   2.3e+001
#         AATATTTG   CAAATATT          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CAAACAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAAACAAA   TTTGTTTG         10          1   5.4e-003   3.4e+001
#         CAAACAAA   TTTGTTTG         10          1   5.4e-003   3.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 3.4e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATATAT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATATAT   ATATATTT          8          1   1.9e-002   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF TATATATA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATATATA   TATATATA          6          0   1.5e-002   9.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.3e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.76 seconds