# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG33213/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG33213.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG33213.fasta (Sat Feb 12 15:50:45 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.286 C 0.215 G 0.213 T 0.286


MOTIF GGTCACAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTCACAC   GTGTGACC         12          0   2.1e-004   1.4e+000
#         GGTCACAC   GTGTGACC         12          0   2.1e-004   1.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.4e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAAATAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAATAC   GTATTTTT          8          0   3.7e-003   2.4e+001
#         AAAAATAC   GTATTTTT          8          0   3.7e-003   2.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.4e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTGGCAGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGGCAGC   GCTGCCAG          7          0   7.5e-003   4.9e+001
#         CTGGCAGC   GCTGCCAG          7          0   7.5e-003   4.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.9e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AATATACC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATATACC   GGTATATT          6          0   1.5e-002   9.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATCGATAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCGATAG   CTATCGAT          6          0   1.5e-002   9.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 9.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.91 seconds