# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG3281/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG3281.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG3281.fasta (Sat Feb 12 15:50:45 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n12.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.332 C 0.168 G 0.163 T 0.338


MOTIF AAACAAAT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACAAAT   ATTTGTTT         11          0   4.4e-004   2.6e+000
#         AAACAAAT   ATTTGTTT         11          0   4.4e-004   2.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.6e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF CAACCCTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAACCCTG   CAGGGTTG         10          0   8.9e-004   5.3e+000
#         CAACCCTG   CAGGGTTG         10          0   8.9e-004   5.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 5.3e+000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATAAATAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAAATAA   TTATTTAT         11          2   1.0e-002   6.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 6.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATACAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATACAA   TTGTATTT          6          0   1.5e-002   8.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTTTGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTTGAA   TTCAAAAT          6          0   1.5e-002   8.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.78 seconds