# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG3163/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG3163.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG3163.fasta (Sat Feb 12 15:50:45 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.272 C 0.227 G 0.234 T 0.267


MOTIF AAGAGARH DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGAGARH   DYTCTCTT         88          7   9.6e-023   5.9e-019
#         AAGAGAGC   GCTCTCTT         26          1   1.1e-007   6.8e-004
#         AAGAGAGT   ACTCTCTT         16          0   1.2e-005   7.3e-002
#         AAGAGAAA   TTTCTCTT         20          2   4.4e-005   2.7e-001
#         AAGAGAAT   ATTCTCTT         13          0   1.0e-004   6.4e-001
#         AAGAGAGA   TCTCTCTT         15          2   1.0e-003   6.1e+000
#         AAGAGAAC   GTTCTCTT         12          2   5.9e-003   3.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 107 E= 5.9e-019
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.439252 0.000000 0.560748 0.000000
0.364486 0.364486 0.000000 0.271028


MOTIF AAAGAGCR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGAGCR   YGCTCTTT         25          1   2.2e-007   1.2e-003
#         AAAGAGCG   CGCTCTTT         15          1   2.1e-004   1.2e+000
#         AAAGAGCA   TGCTCTTT         10          0   8.9e-004   4.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.2e-003
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.400000 0.000000 0.600000 0.000000


MOTIF GCTCTTAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCTCTTAA   TTAAGAGC         13          1   8.0e-004   4.3e+000
#         GCTCTTAA   TTAAGAGC         13          1   8.0e-004   4.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 4.3e+000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGAGAAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGAGAAG   CTTCTCTT          8          1   1.9e-002   9.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 9.9e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAAGAGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGAGA   TCTCTTTT          7          0   7.5e-003   3.9e+001
#         AAAAGAGA   TCTCTTTT          7          0   7.5e-003   3.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.9e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.97 seconds