# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG3065/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG3065.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG3065.fasta (Sat Feb 12 15:50:45 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n12.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.216 C 0.280 G 0.276 T 0.228


MOTIF CACGCCCH DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACGCCCH   DGGGCGTG         94          2   1.7e-030   1.0e-026
#         CACGCCCA   TGGGCGTG         49          0   1.3e-016   7.9e-013
#         CACGCCCC   GGGGCGTG         42          2   1.0e-011   6.2e-008
#         CACGCCCT   AGGGCGTG          8          0   3.7e-003   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-026
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.500000 0.420000 0.000000 0.080000


MOTIF ACGCCCAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGCCCAC   GTGGGCGT         10          0   8.9e-004   5.1e+000
#         ACGCCCAC   GTGGGCGT         10          0   8.9e-004   5.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 5.1e+000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCCACGCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCACGCC   GGCGTGGC          9          0   1.8e-003   1.0e+001
#         GCCACGCC   GGCGTGGC          9          0   1.8e-003   1.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.0e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAGGGGCG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGGGGCG   CGCCCCTT          8          0   3.7e-003   2.1e+001
#         AAGGGGCG   CGCCCCTT          8          0   3.7e-003   2.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.1e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACCGCCCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCGCCCA   TGGGCGGT          9          1   1.0e-002   5.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.6e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.53 seconds