# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG2712/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG2712.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG2712.fasta (Sat Feb 12 15:50:45 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.363 C 0.135 G 0.133 T 0.369


MOTIF ATTGTGAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTGTGAA   TTCACAAT         16          0   1.2e-005   6.4e-002
#         ATTGTGAA   TTCACAAT         16          0   1.2e-005   6.4e-002

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 6.4e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAATATT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATATT   AATATTTT         16          5   1.2e-002   6.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 6.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAATACAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATACAA   TTGTATTT          6          0   1.5e-002   7.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.9e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TAAATGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAATGAA   TTCATTTA          6          0   1.5e-002   7.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.9e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TAATACAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAATACAA   TTGTATTA          6          0   1.5e-002   7.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.9e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.15 seconds