# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG2678/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG2678.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG2678.fasta (Sat Feb 12 15:50:45 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.376 C 0.127 G 0.115 T 0.383


MOTIF ATTTATAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTATAA   TTATAAAT         13          2   3.3e-003   1.7e+001
#         ATTTATAA   TTATAAAT         13          2   3.3e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATTTGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTTGAA   TTCAAATT          7          0   7.5e-003   3.8e+001
#         AATTTGAA   TTCAAATT          7          0   7.5e-003   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATATTTAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATTTAC   GTAAATAT          6          0   1.5e-002   7.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CAAATACA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAAATACA   TGTATTTG          6          0   1.5e-002   7.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.6e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACTTAACA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTTAACA   TGTTAAGT          5          0   3.1e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.97 seconds