# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG1832/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG1832.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG1832.fasta (Sat Feb 12 15:50:45 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:56:00 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.221 C 0.273 G 0.297 T 0.209


MOTIF GAWAGAGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAWAGAGA   TCTCTWTC         62          4   2.3e-016   1.2e-012
#         GAAAGAGA   TCTCTTTC         52          3   5.4e-014   2.9e-010
#         GATAGAGA   TCTCTATC         11          1   2.9e-003   1.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 1.2e-012
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.818182 0.000000 0.000000 0.181818
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTCGCTCR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCGCTCR   YGAGCGAG         34          4   1.2e-007   5.9e-004
#         CTCGCTCG   CGAGCGAG         22          2   1.2e-005   6.1e-002
#         CTCGCTCA   TGAGCGAG         12          2   5.9e-003   3.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 5.9e-004
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.315789 0.000000 0.684211 0.000000


MOTIF GAGAGGGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAGAGGGA   TCCCTCTC         19          3   3.3e-004   1.6e+000
#         GAGAGGGA   TCCCTCTC         19          3   3.3e-004   1.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 1.6e+000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGAGACGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGACGG   CCGTCTCT         12          1   1.5e-003   7.5e+000
#         AGAGACGG   CCGTCTCT         12          1   1.5e-003   7.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 7.5e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGTGCGAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGCGAG   CTCGCACT          7          0   7.5e-003   3.7e+001
#         AGTGCGAG   CTCGCACT          7          0   7.5e-003   3.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.21 seconds