# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG18262/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG18262.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG18262.fasta (Sat Feb 12 15:50:45 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:57 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.379 C 0.124 G 0.125 T 0.372


MOTIF TAAAATAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAAATAA   TTATTTTA         16          4   5.1e-003   2.6e+001
#         TAAAATAA   TTATTTTA         16          4   5.1e-003   2.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.6e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATATATAT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATATAT   ATATATAT          9          1   1.0e-002   5.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAAAAGTT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAGTT   AACTTTTT          8          1   1.9e-002   9.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.4e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF TAAATAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAATAAA   TTTATTTA         14          5   2.9e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.5e+002
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGTAATA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGTAATA   TATTACTT          7          0   7.5e-003   3.7e+001
#         AAGTAATA   TATTACTT          7          0   7.5e-003   3.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.7e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.16 seconds