# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG17829/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG17829.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG17829.fasta (Sat Feb 12 15:50:44 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:57 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.321 C 0.164 G 0.173 T 0.342


MOTIF GMTTCTCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GMTTCTCA   TGAGAAKC         36          1   7.6e-011   4.4e-007
#         GCTTCTCA   TGAGAAGC         25          0   1.6e-008   9.1e-005
#         GATTCTCA   TGAGAATC         11          1   2.9e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 4.4e-007
0.000000 0.000000 1.000000 0.000000
0.305556 0.694444 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGAGAGGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGAGGC   GCCTCTCT          7          0   7.5e-003   4.2e+001
#         AGAGAGGC   GCCTCTCT          7          0   7.5e-003   4.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGAAGGGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAAGGGC   GCCCTTCT          6          0   1.5e-002   8.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAATAATA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATAATA   TATTATTT         10          2   1.8e-002   1.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.0e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TAAATTTA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAATTTA   TAAATTTA          8          1   1.9e-002   1.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.0e+002
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.21 seconds