# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG17385/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG17385.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG17385.fasta (Sat Feb 12 15:50:44 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.281 C 0.221 G 0.233 T 0.264


MOTIF GAAGMAGM DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAGMAGM   KCTKCTTC        140         10   2.0e-041   1.1e-037
#         GAAGAAGA   TCTTCTTC        101          2   2.3e-033   1.2e-029
#         GAAGAAGC   GCTTCTTC         53          5   1.3e-012   7.2e-009
#         GAAGCAGC   GCTGCTTC         29          2   1.1e-007   5.9e-004
#         GAAGCAGA   TCTGCTTC         15          2   1.0e-003   5.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 158 E= 1.1e-037
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.803797 0.196203 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.708861 0.291139 0.000000 0.000000


MOTIF GCAGCAGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCAGCAGC   GCTGCTGC         12          1   1.5e-003   7.6e+000
#         GCAGCAGC   GCTGCTGC         12          1   1.5e-003   7.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 7.6e+000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CAACAACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAACAACA   TGTTGTTG          8          0   3.7e-003   1.8e+001
#         CAACAACA   TGTTGTTG          8          0   3.7e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.8e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGAGGAAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGGAAG   CTTCCTCT         12          2   5.9e-003   2.9e+001
#         AGAGGAAG   CTTCCTCT         12          2   5.9e-003   2.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GCCATTCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCATTCA   TGAATGGC          6          0   1.5e-002   7.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.3e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.64 seconds