# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG17186/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG17186.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG17186.fasta (Sat Feb 12 15:50:44 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.266 C 0.230 G 0.237 T 0.267


MOTIF ATCGATWR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCGATWR   YWATCGAT         35          1   1.6e-010   1.0e-006
#         ATCGATAG   CTATCGAT         18          0   2.8e-006   1.8e-002
#         ATCGATTA   TAATCGAT         11          0   4.4e-004   2.8e+000
#         ATCGATAA   TTATCGAT         11          1   2.9e-003   1.8e+001
#         ATCGATTG   CAATCGAT          7          0   7.5e-003   4.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.0e-006
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.638889 0.000000 0.000000 0.361111
0.388889 0.000000 0.611111 0.000000


MOTIF AACAGCAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAGCAC   GTGCTGTT         17          0   5.8e-006   3.5e-002
#         AACAGCAC   GTGCTGTT         17          0   5.8e-006   3.5e-002

letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.5e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGTCACAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTCACAC   GTGTGACC         15          0   2.5e-005   1.5e-001
#         GGTCACAC   GTGTGACC         15          0   2.5e-005   1.5e-001

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.5e-001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AWCAGCTG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AWCAGCTG   CAGCTGWT         14          0   5.1e-005   3.0e-001
#         ATCAGCTG   CAGCTGAT          9          0   1.8e-003   1.1e+001
#         AACAGCTG   CAGCTGTT          8          0   3.7e-003   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 3.0e-001
1.000000 0.000000 0.000000 0.000000
0.428571 0.000000 0.000000 0.571429
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGTGCTGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGCTGC   GCAGCACT          8          0   3.7e-003   2.2e+001
#         AGTGCTGC   GCAGCACT          8          0   3.7e-003   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 2.00 seconds