# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG15696/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG15696.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG15696.fasta (Sat Feb 12 15:50:44 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.354 C 0.154 G 0.160 T 0.332


MOTIF AGYAAACA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGYAAACA   TGTTTRCT         16          0   1.2e-005   6.9e-002
#         AGTAAACA   TGTTTACT          9          0   1.8e-003   1.1e+001
#         AGCAAACA   TGTTTGCT          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 6.9e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.437500 0.000000 0.562500
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATAAATAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAAATAA   TTATTTAT         16          3   1.9e-003   1.1e+001
#         ATAAATAA   TTATTTAT         16          3   1.9e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATATTT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATATTT   AAATATTT         11          1   2.9e-003   1.6e+001
#         AAATATTT   AAATATTT         11          1   2.9e-003   1.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.6e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATTAAATA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTAAATA   TATTTAAT          7          0   7.5e-003   4.2e+001
#         ATTAAATA   TATTTAAT          7          0   7.5e-003   4.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TTATAAAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTATAAAA   TTTTATAA          7          0   7.5e-003   4.2e+001
#         TTATAAAA   TTTTATAA          7          0   7.5e-003   4.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.2e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 2.04 seconds