# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG15601/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG15601.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG15601.fasta (Sat Feb 12 15:50:44 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:57 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.289 C 0.207 G 0.198 T 0.306


MOTIF ATTGAAMG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTGAAMG   CKTTCAAT         31          0   1.7e-010   1.1e-006
#         ATTGAAAG   CTTTCAAT         25          0   1.6e-008   1.0e-004
#         ATTGAACG   CGTTCAAT          7          0   7.5e-003   4.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 1.1e-006
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.794118 0.205882 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AATTGAAW DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTGAAW   WTTCAATT         27          5   3.4e-005   2.1e-001
#         AATTGAAT   ATTCAATT         12          1   1.5e-003   9.4e+000
#         AATTGAAA   TTTCAATT         16          4   5.1e-003   3.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.1e-001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.551724 0.000000 0.000000 0.448276


MOTIF CGTTCAAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGTTCAAC   GTTGAACG          9          0   1.8e-003   1.1e+001
#         CGTTCAAC   GTTGAACG          9          0   1.8e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.1e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGTTGAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTTGAAA   TTTCAACT          8          0   3.7e-003   2.2e+001
#         AGTTGAAA   TTTCAACT          8          0   3.7e-003   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGGTTGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGGTTGAA   TTCAACCG          7          0   7.5e-003   4.4e+001
#         CGGTTGAA   TTCAACCG          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.4e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.26 seconds