# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG14965/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG14965.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG14965.fasta (Sat Feb 12 15:50:44 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:57 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.266 C 0.224 G 0.238 T 0.272


MOTIF GCGCCAYC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGCCAYC   GRTGGCGC         27          0   3.5e-009   2.3e-005
#         GCGCCATC   GATGGCGC         15          0   2.5e-005   1.6e-001
#         GCGCCACC   GGTGGCGC         12          0   2.1e-004   1.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 2.3e-005
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.444444 0.000000 0.555556
0.000000 1.000000 0.000000 0.000000


MOTIF AGAGGGCG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGGGCG   CGCCCTCT          9          0   1.8e-003   1.1e+001
#         AGAGGGCG   CGCCCTCT          9          0   1.8e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGCTGCTG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCTGCTG   CAGCAGCT          7          0   7.5e-003   4.7e+001
#         AGCTGCTG   CAGCAGCT          7          0   7.5e-003   4.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCAGATGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAGATGG   CCATCTGG          7          0   7.5e-003   4.6e+001
#         CCAGATGG   CCATCTGG          7          0   7.5e-003   4.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.6e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAATATGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATATGC   GCATATTT          6          0   1.5e-002   9.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.27 seconds