# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG14711/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG14711.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG14711.fasta (Sat Feb 12 15:50:44 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:56:00 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.290 C 0.202 G 0.202 T 0.306


MOTIF GRCAACYC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GRCAACYC   GRGTTGYC         59          0   3.6e-020   2.2e-016
#         GGCAACCC   GGGTTGCC         21          0   3.1e-007   1.9e-003
#         GGCAACTC   GAGTTGCC         19          0   1.3e-006   8.4e-003
#         GACAACCC   GGGTTGTC         12          0   2.1e-004   1.3e+000
#         GACAACTC   GAGTTGTC          7          0   7.5e-003   4.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 2.2e-016
0.000000 0.000000 1.000000 0.000000
0.322034 0.000000 0.677966 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.559322 0.000000 0.440678
0.000000 1.000000 0.000000 0.000000


MOTIF TATCGATA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATCGATA   TATCGATA          8          0   3.7e-003   2.2e+001
#         TATCGATA   TATCGATA          8          0   3.7e-003   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.2e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGTGTTGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGTTGC   GCAACACT          6          0   1.5e-002   8.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGCTGCCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGCTGCCA   TGGCAGCC          6          0   1.5e-002   8.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.9e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTTTCAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTTCAA   TTGAAAAT          8          1   1.9e-002   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.1e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.25 seconds