# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG13775/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG13775.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG13775.fasta (Sat Feb 12 15:50:43 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:11 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.315 C 0.186 G 0.191 T 0.309


MOTIF GCGGATGY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGGATGY   RCATCCGC         47          0   6.5e-016   3.8e-012
#         GCGGATGC   GCATCCGC         31          0   1.7e-010   1.0e-006
#         GCGGATGT   ACATCCGC         26          0   7.5e-009   4.3e-005

letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 3.8e-012
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.590909 0.000000 0.409091


MOTIF ATATTTGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATTTGA   TCAAATAT          6          0   1.5e-002   8.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 8.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTTATAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTATAA   TTATAAAT          6          0   1.5e-002   8.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TATATTCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATATTCA   TGAATATA          6          0   1.5e-002   8.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.3e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAACATAT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACATAT   ATATGTTT          5          0   3.1e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 1.23 seconds