# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG12391/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG12391.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG12391.fasta (Sat Feb 12 15:50:43 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.392 C 0.114 G 0.118 T 0.377


MOTIF AAATRTAT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATRTAT   ATAYATTT         26          2   8.4e-007   4.2e-003
#         AAATATAT   ATATATTT         18          2   1.6e-004   7.7e-001
#         AAATGTAT   ATACATTT          8          0   3.7e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 4.2e-003
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.692308 0.000000 0.307692 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAAAAATC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAATC   GATTTTTT          6          0   1.5e-002   7.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.4e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATATTACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATTACA   TGTAATAT          6          0   1.5e-002   7.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTATTAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTATTAAA   TTTAATAC          6          0   1.5e-002   7.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.3e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TAATACAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAATACAA   TTGTATTA          6          0   1.5e-002   7.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.3e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.83 seconds