# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG1233/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG1233.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG1233.fasta (Sat Feb 12 15:50:43 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:57 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.310 C 0.187 G 0.189 T 0.313


MOTIF AAATATTK DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATATTK   MAATATTT         26          0   7.5e-009   4.7e-005
#         AAATATTT   AAATATTT         14          0   5.1e-005   3.1e-001
#         AAATATTG   CAATATTT         12          0   2.1e-004   1.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 4.7e-005
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.461538 0.538462


MOTIF ATGTTTGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGTTTGC   GCAAACAT          6          0   1.5e-002   9.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TATTTACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATTTACA   TGTAAATA          6          0   1.5e-002   9.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.2e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGTAAACA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGTAAACA   TGTTTACA          6          0   1.5e-002   9.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 9.1e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAACGGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACGGAA   TTCCGTTT          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.24 seconds