# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG10979/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG10979.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG10979.fasta (Sat Feb 12 15:50:43 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n08.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.329 C 0.161 G 0.165 T 0.344


MOTIF AGRTGGCG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGRTGGCG   CGCCAYCT         35          0   8.1e-012   4.7e-008
#         AGGTGGCG   CGCCACCT         21          0   3.1e-007   1.8e-003
#         AGATGGCG   CGCCATCT         15          0   2.5e-005   1.4e-001

letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 4.7e-008
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.428571 0.000000 0.571429 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATATTTTC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATTTTC   GAAAATAT          6          0   1.5e-002   8.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAATAAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATAAT   ATTATTTT          8          1   1.9e-002   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AATATATG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATATATG   CATATATT          5          0   3.1e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATATTTAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATTTAA   TTAAATAT          8          2   5.3e-002   2.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.9e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.67 seconds