# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG10431/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG10431.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG10431.fasta (Sat Feb 12 15:50:42 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.278 C 0.217 G 0.215 T 0.290


MOTIF HTACATGR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    HTACATGR   YCATGTAD         88          1   1.5e-029   9.6e-026
#         CTACATGG   CCATGTAG         26          0   7.5e-009   4.7e-005
#         ATACATGG   CCATGTAT         23          1   9.2e-007   5.7e-003
#         TTACATGG   CCATGTAA         16          0   1.2e-005   7.5e-002
#         ATACATGA   TCATGTAT         11          0   4.4e-004   2.7e+000
#         CTACATGA   TCATGTAG          8          0   3.7e-003   2.3e+001
#         TTACATGA   TCATGTAA          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 94 E= 9.6e-026
0.361702 0.382979 0.000000 0.255319
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.287234 0.000000 0.712766 0.000000


MOTIF CCATGTAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCATGTAC   GTACATGG         11          1   2.9e-003   1.6e+001
#         CCATGTAC   GTACATGG         11          1   2.9e-003   1.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.6e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACATACAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACATACAT   ATGTATGT         14          3   5.7e-003   3.2e+001
#         ACATACAT   ATGTATGT         14          3   5.7e-003   3.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 3.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ACACAAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACAAAA   TTTTGTGT          6          0   1.5e-002   8.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACATGCGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACATGCGA   TCGCATGT          5          0   3.1e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.61 seconds