# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_BEAF-32/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/BEAF-32.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/BEAF-32.fasta (Sat Feb 12 15:50:42 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n12.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:56 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.310 C 0.195 G 0.187 T 0.308


MOTIF HATCGATR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    HATCGATR   YATCGATD         97         10   1.6e-023   9.4e-020
#         TATCGATA   TATCGATA         58          2   4.8e-017   2.8e-013
#         CATCGATG   CATCGATG         12          1   1.5e-003   8.8e+000
#         AATCGATA   TATCGATT         18          4   1.8e-003   1.0e+001
#         CATCGATA   TATCGATG         15          3   3.3e-003   1.9e+001
#         AATCGATG   CATCGATT          7          0   7.5e-003   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 115 E= 9.4e-020
0.226087 0.156522 0.000000 0.617391
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.739130 0.000000 0.260870 0.000000


MOTIF ACCGATAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCGATAG   CTATCGGT         12          0   2.1e-004   1.1e+000
#         ACCGATAG   CTATCGGT         12          0   2.1e-004   1.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.1e+000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATCGAAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCGAAAA   TTTTCGAT          9          1   1.0e-002   5.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAACATCG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACATCG   CGATGTTT          5          0   3.1e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AATAATCG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATAATCG   CGATTATT          5          0   3.1e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.22 seconds