# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Asciz/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Asciz.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Asciz.fasta (Sat Feb 12 15:50:41 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.331 C 0.165 G 0.171 T 0.334


MOTIF AATATTKA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATATTKA   TMAATATT         22          2   1.2e-005   7.1e-002
#         AATATTTA   TAAATATT         16          2   5.4e-004   3.2e+000
#         AATATTGA   TCAATATT          9          0   1.8e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 7.1e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.363636 0.636364
1.000000 0.000000 0.000000 0.000000


MOTIF GTAAACAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTAAACAA   TTGTTTAC          8          0   3.7e-003   2.1e+001
#         GTAAACAA   TTGTTTAC          8          0   3.7e-003   2.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.1e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGTTTGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGTTTGC   GCAAACAT          7          0   7.5e-003   4.3e+001
#         ATGTTTGC   GCAAACAT          7          0   7.5e-003   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATTTTATA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTTATA   TATAAAAT          6          0   1.5e-002   8.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TATTTACA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATTTACA   TGTAAATA         10          2   1.8e-002   1.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.0e+002
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 2.07 seconds