# DREME 5.3.3 # command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Abd-B/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Abd-B.fasta # positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Abd-B.fasta (Sat Feb 12 15:50:41 EST 2022) # negatives: 250 from shuffled positives # host: c22n04.farnam.hpc.yale.internal # when: Sat Feb 12 15:55:55 EST 2022 MEME version 5.3.3 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.309 C 0.192 G 0.195 T 0.305 MOTIF CAATAAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CAATAAAA TTTTATTG 7 0 7.5e-003 4.9e+001 # CAATAAAA TTTTATTG 7 0 7.5e-003 4.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.9e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAAATGT DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AAAAATGT ACATTTTT 6 0 1.5e-002 9.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.9e+001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF TCGTAAAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST TCGTAAAA TTTTACGA 6 0 1.5e-002 9.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.8e+001 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACTGCTTG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ACTGCTTG CAAGCAGT 5 0 3.1e-002 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CATTTTAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CATTTTAA TTAAAATG 5 0 3.1e-002 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: target motif count reached # Running time: 2.08 seconds