# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_ATbp/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/ATbp.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/ATbp.fasta (Sat Feb 12 15:50:42 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.312 C 0.191 G 0.199 T 0.298


MOTIF TRTTTACW DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TRTTTACW   WGTAAAYA         32          1   1.5e-009   8.7e-006
#         TATTTACT   AGTAAATA          9          0   1.8e-003   1.1e+001
#         TATTTACA   TGTAAATA         10          1   5.4e-003   3.2e+001
#         TGTTTACA   TGTAAACA          7          0   7.5e-003   4.5e+001
#         TGTTTACT   AGTAAACA          7          0   7.5e-003   4.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 8.7e-006
0.000000 0.000000 0.000000 1.000000
0.575758 0.000000 0.424242 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.515152 0.000000 0.000000 0.484848


MOTIF AATATTTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATATTTG   CAAATATT         12          1   1.5e-003   8.8e+000
#         AATATTTG   CAAATATT         12          1   1.5e-003   8.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 8.8e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GGCAAACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGCAAACA   TGTTTGCC          9          0   1.8e-003   1.0e+001
#         GGCAAACA   TGTTTGCC          9          0   1.8e-003   1.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.0e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGTAAATA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTAAATA   TATTTACC          8          0   3.7e-003   2.1e+001
#         GGTAAATA   TATTTACC          8          0   3.7e-003   2.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.1e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACAAATA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAAATA   TATTTGTT          7          0   7.5e-003   4.2e+001
#         AACAAATA   TATTTGTT          7          0   7.5e-003   4.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.97 seconds